Catalogue of the Rust Fungi of Belgium

チェックリスト
最新バージョン Meise Botanic Garden により出版 3 19, 2019 Meise Botanic Garden
公開日:
2019/03/19
ライセンス:
CC0 1.0

DwC-A形式のリソース データまたは EML / RTF 形式のリソース メタデータの最新バージョンをダウンロード：

DwC ファイルとしてのデータ ダウンロード 755 レコード English で (78 KB) - 更新頻度: not planned
EML ファイルとしてのメタデータ ダウンロード English で (19 KB)
RTF ファイルとしてのメタデータ ダウンロード English で (17 KB)

説明

The catalogue of rust fungi in Belgium is a species checklist dataset published by the Botanic Garden Meise. It contains information on 237 native and non-native species of rust fungi occurring in Belgium. The catalogue is the result of literature review and herbarium inspection of the main public Belgian herbaria, complemented with specimens from private herbaria. The checklist has been published as three separate volumes by Vanderweyen & Fraiture (2006, 2008 and 2011). Here it is published as a standardized Darwin Core Archive and includes for each rust fungus: the scientific name, higher classification, full bibliographic reference and stable taxon ID (in the taxon core), the occurrence status, whether the species is native or introduced (establishment) and date of first and last recorded observation in Belgium (given as a date range in the event date in the distribution extension). In the taxon core, we also provide the taxonomic information (scientific name and higher classification) of all 518 recorded host plant species and link those to their pathogenic rust fungus/fungi in the resource relationship extension. Issues with the dataset can be reported at: https://github.com/trias-project/uredinales-belgium-checklist

We have released this dataset to the public domain under a Creative Commons Zero waiver. We would appreciate it if you follow the GBIF citation guidelines (https://www.gbif.org/citation-guidelines) when using the data. If you have any questions regarding this dataset, don't hesitate to contact us via the contact information provided in the metadata or via https://twitter.com/trias_project.

データ レコード

この チェックリスト リソース内のデータは、1 つまたは複数のデータ テーブルとして生物多様性データを共有するための標準化された形式であるダーウィン コア アーカイブ (DwC-A) として公開されています。 コア データ テーブルには、755 レコードが含まれています。

拡張データ テーブルは2 件存在しています。拡張レコードは、コアのレコードについての追加情報を提供するものです。 各拡張データ テーブル内のレコード数を以下に示します。

Taxon (コア)
755
ResourceRelationship 
677
Distribution 
237

この IPT はデータをアーカイブし、データ リポジトリとして機能します。データとリソースのメタデータは、 ダウンロード セクションからダウンロードできます。 バージョン テーブルから公開可能な他のバージョンを閲覧でき、リソースに加えられた変更を知ることができます。

バージョン

次の表は、公にアクセス可能な公開バージョンのリソースのみ表示しています。

引用方法

研究者はこの研究内容を以下のように引用する必要があります。:

Vanderweyen A, Fraiture A, Groom Q, Desmet P, Reyserhove L (2018): Catalogue of the Rust Fungi of Belgium. v1.2. Botanic Garden Meise. Dataset/Checklist. https://doi.org/10.15468/2dboyn

権利

研究者は権利に関する下記ステートメントを尊重する必要があります。:

パブリッシャーとライセンス保持者権利者は Meise Botanic Garden。 To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.

GBIF登録

このリソースをはGBIF と登録されており GBIF UUID: b043c480-dd36-4f4f-aa82-e188753ff09dが割り当てられています。   Belgian Biodiversity Platform によって承認されたデータ パブリッシャーとして GBIF に登録されているMeise Botanic Garden が、このリソースをパブリッシュしました。

キーワード

Checklist; Inventorythematic; checklist; inventory; rust fungi; rusts; Uredinales; host plants; plant pathogens; Belgium; TrIAS

連絡先

Arthur Vanderweyen
  • 最初のデータ採集者
Researcher
Botanic Garden Meise
BE
André Fraiture
  • 最初のデータ採集者 ●
  • 連絡先
Researcher
Botanic Garden Meise
BE
Quentin Groom
  • 最初のデータ採集者
Researcher
Botanic Garden Meise
BE
http://orcid.org/0000-0002-0596-5376
Peter Desmet
  • メタデータ提供者 ●
  • 最初のデータ採集者
Open data coordinator
Research Institute for Nature and Forest (INBO)
BE
http://orcid.org/0000-0002-8442-8025
Lien Reyserhove
  • メタデータ提供者 ●
  • 最初のデータ採集者
Data Publisher
Research Institute for Nature and Forest (INBO)
BE
http://orcid.org/0000-0001-7484-9267

地理的範囲

This checklist covers all rust fungi recorded in Belgium. However, the presence of several species must still be confirmed because they are attested only by herbarium specimens or literature.

座標（緯度経度） 南 西 [49.49, 2.53], 北 東 [51.51, 6.41]

生物分類学的範囲

This dataset includes pathogenic rust fungi, i.e. fungi belonging to the order Pucciniales (previously also known as Uredinales), and their known host plants in Belgium. In total, 237 Uredinales species have been recorded in Belgium of which 26 are confirmed as ‘alien’ and 52 as ‘native’. The largest proportion of rust fungi belongs to the Pucciniaceae (78%), followed by the Melampsoraceae (6%) and Phragmidiaceae (6%). Small fractions are classified under the Coleosporiaceae, Pucciniastraceae, Cronartiaceae, Chaconiaceae, Uropyxidaceae, Uropyxidaceae, Raveneliaceae and Chaconiaceae.

Kingdom Fungi
Phylum Basidiomycota

時間的範囲

開始日 / 終了日 1850-01-01 / 2012-12-31

プロジェクトデータ

Imagine a future where dynamically, from year to year, we can track the progression of alien species (AS), identify emerging species, assess their current and future risk and timely inform policy in a seamless data-driven workflow. One that is built on open science and open data infrastructures. By using international biodiversity standards and facilities, we would ensure interoperability, repeatability and sustainability. This would make the process adaptable to future requirements in an evolving IAS policy landscape both locally and internationally. The project Tracking Invasive Alien Species (TrIAS) aims to do this for Belgium. For a full project description, see Vanderhoeven et al. (2017, https://doi.org/10.3897/rio.3.e13414).

タイトル Tracking Invasive Alien Species (TrIAS)
識別子 TrIAS
ファンデイング TrIAS is funded by the Belgian Science Policy Office (BELSPO) call for Belgian Research Action through Interdisciplinary Networks (BRAIN).
Study Area Description Belgium.
研究の意図、目的、背景など（デザイン） The project builds on two components: 1) The establishment of a data mobilization framework for alien species data from diverse data sources and 2) the development of data-driven procedures for risk evaluation based on risk modelling, risk mapping and risk assessment. TrIAS uses facilities from the Global Biodiversity Information Facility (GBIF, http://www.gbif.org), standards from the Biodiversity Information Standards organization (TDWG, http://www.tdwg.org) and expertise from Lifewatch (http://www.lifewatch.be) to create and facilitate a systematic workflow. Alien species data are gathered from a large set of regional, national and international initiatives, including citizen science data, with a wide taxonomic scope from marine, terrestrial and freshwater environments. Observation data are funnelled in repeatable ways to GBIF. In parallel, a Belgian checklist of alien species is established, benefiting from various taxonomic and project-based checklists foreseen for GBIF publication.

プロジェクトに携わる要員:

Tim Adriaens
  • 論文著者
http://orcid.org/0000-0001-7268-4200
Peter Desmet
  • 論文著者
http://orcid.org/0000-0002-8442-8025
Quentin Groom
  • 研究代表者
http://orcid.org/0000-0002-0596-5376
Diederik Strubbe
  • 論文著者
http://orcid.org/0000-0002-2613-4985
Sonia Vanderhoeven
  • 論文著者
http://orcid.org/0000-0002-6298-5373

収集方法

See Vanderweyen & Fraiture (2007)

Study Extent See Vanderweyen & Fraiture (2007)
Quality Control See step description.

Method step description:

  1. The source data for this standardized checklist are the publications Vanderweyen & Fraiture (2007, 2008, 2011) which were manually transcribed to a tab-delimited text file.
  2. This raw data file was uploaded to a GitHub repository (https://github.com/trias-project/uredinales-belgium-checklist). See https://trias-project.github.io/uredinales-belgium-checklist for an introduction to this repository and the mapping of this dataset.
  3. We developed a RMarkdown script to document and perform the transformation of the data to Darwin Core, which includes the following steps:
  4. Perform some basic data cleaning of the raw data.
  5. Generate stable and unique identifiers for each taxon (taxonID).
  6. Generate the full bibliographic citations (bibliographicCitation).
  7. Create a taxon core file (http://rs.gbif.org/core/dwc_taxon.xml). The taxon core provides the taxonomic information for both rust fungi and their recorded host plants.
  8. Create a distribution extension file (http://rs.gbif.org/extension/gbif/1.0/distribution.xml), including standardization of the distribution date range.
  9. Create a resource relationship extension file (http://rs.gbif.org/extension/dwc/resource_relation_2018_01_18.xml), with information about the interactions between the pathogen (rust fungus) and host plant.
  10. The resulting Darwin Core data files are uploaded to the INBO IPT and documented with metadata.
  11. The dataset is published and registered with GBIF.

書誌情報の引用

  1. Vanderweyen A, Fraiture A. (2011) Catalogue des Uredinals de Belgique (3ème partie). Puccinaceae (genre Puccinia). Lejeunia 189: 1-65.
  2. Vanderweyen A, Fraiture A. (2008) Catalogue des Uredinals de Belgique (2ème partie). Puccinaceae (sauf Puccinia). Lejeunia 185: 1-31.
  3. Vanderweyen A., Fraiture A. (2007) Catalogue des Uredinals de Belgique. (1st partie). Chaconiaceae, Coleosporiaceae, Cronartiaceae, Melampsoraceae, Phragmidiaceae, Pucciniastraceae, Raveneliaceae et Uropyxidaceae. Lejeunia 183: 1-36.
  4. Vanderhoeven S, Adriaens T, Desmet P, Strubbe D, Backeljau T, Barbier Y, Brosens D, Cigar J, Coupremanne M, De Troch R, Eggermont H, Heughebaert A, Hostens K, Huybrechts P, Jacquemart A, Lens L, Monty A, Paquet J, Prévot C, Robertson T, Termonia P, Van De Kerchove R, Van Hoey G, Van Schaeybroeck B, Vercayie D, Verleye T, Welby S, Groom Q (2017) Tracking Invasive Alien Species (TrIAS): Building a data-driven framework to inform policy. Research Ideas and Outcomes 3: e13414. https://doi.org/10.3897/rio.3.e13414

追加のメタデータ

目的 This dataset was published as open data for the TrIAS project (Tracking Invasive Alien Species http://trias-project.be, Vanderhoeven et al. 2017), with technical support provided by the Research Institute for Nature and Forest (INBO). It is selected as one of the authoritative sources for the compilation of a unified and standardized checklist of alien species in Belgium.
代替識別子 b043c480-dd36-4f4f-aa82-e188753ff09d
https://ipt.biodiversity.be/resource?r=uredinales-belgium-checklist